I love this song, and I'm glad to see a port of it! This is sounding really neat for the most part, especially the way the background instruments blend together in the later sections.
The one piece of feedback I would have is to remove the duplicate notes in sections where #0 and #1 play the same note, since it amplifies the note and makes it a bit loud.
Maybe try adding $F4 $02 as a global command if you haven't already.